miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|211624296|gb|GE499274.1|GE499274 CGAAGAAATTCTACATCATACGAACTAGCCAAGGATGATCCAATACTATGGATAGAAAACGATAAACAAATGCATAAAAA
TTAAGTAGATAGTTGTAGAGACTTTTGACCAAAGTCCCAACGATAAGTTTTGTTTTTTGGTCAGTAGATCATGCATATGT
ATCCCACCAAGAACATGCATAGCATCATGAGCAATCAGCCTTGGAAATATTTTTAAGCAGAGTGACTGCTCATGATGTTA
TCTCATTTCTTGACAGGAACTTGTTCAACACGTGCGAAAACATAACTGTTGCCCCCTTGCTAGACTGTCCTACACCTTTG
ATCCGTTCATCGGAACCCTCCGTTTGGAGCTGGAGCCCAATAATCCGCTCCGTTGTCACTCCCAACTTGCATCGTGCATG
AAACAGGAACTAGACATAGTCCTCTACTTCTCAAATCCTTCTTTGGTTCTTCATGAGGATCCTGCTCAAGGGCAGATCCT
TTCATCTTCATGCAGCTATCATTCAGAAGCTGACCAGGATCTTCAGGAAATAAACAGTTTCTCTCTCCTTGTTGAACAGA
ATGTCGTTGGTTTCTCATGTTTACTGATCCACTGCCAAGGTAAGGTAGGCTGAGGGCCTCAATTTGACTCTGAAGGATCT
TATGTAACAATAGCTTCTAAAGCACCGAAGCTGTGTCAGTCTTTCAAACGGAGAACAGCTGGTGAGTGCTGTTATCTGTC
CCTAGTTTTCTTTCTCCCTTGAGGAAATGATTGAAGAG




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  151 bits (382), Expect = 4e-36
 Identities = 84/139 (60%), Positives = 105/139 (75%), Gaps = 7/139 (5%)
 Frame = -1

Query: 743 LKGERKLGTDNSTHQLFS-V*KTDTASVL*KLLLH-KILQSQIEALSLPYLGS-GSVNMR 573
           ++ E+  G   + HQL S   KTDTASVL + + + + LQSQIEALS PY G+  S NMR
Sbjct: 264 VRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMR 323

Query: 572 NQRHSVQQGERNCLFPEDPGQLLNDSCMKMKGSALE----QDPHEEPKKDLRSRGLCLVP 405
           +Q+H   QG+R+C+FPEDPGQL+ND CMK +G++      Q+  EEPKKDLRSRGLCLVP
Sbjct: 324 HQQHL--QGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVP 381

Query: 404 VSCTMQVGSDNGADYWAPA 348
           +SCT+QVGSDNGADYWAPA
Sbjct: 382 ISCTLQVGSDNGADYWAPA 400